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CNTNAP5-DT CNTNAP5 divergent transcript [ Homo sapiens (human) ]

Gene ID: 107985820, updated on 10-Oct-2023

Summary

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Official Symbol
CNTNAP5-DTprovided by HGNC
Official Full Name
CNTNAP5 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:55794
See related
Ensembl:ENSG00000228400 AllianceGenome:HGNC:55794
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CNTNAP5-DT in Genome Data Viewer
Location:
2q14.3
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (124011934..124025174, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (124449396..124462639, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (124769511..124782751, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene PSMD14 pseudogene 1 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:124597039-124598238 Neighboring gene RN7SK pseudogene 102 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:124782689-124783595 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:124803332-124804075 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:124804076-124804818 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:124854974-124855478 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:124855479-124855982 Neighboring gene contactin associated protein family member 5 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:125290673-125291174 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr2:125291175-125291674 Neighboring gene MT-ND5 pseudogene 22 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr2:125584062-125585261 Neighboring gene RNA, 5S ribosomal pseudogene 102

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. The sequence of the human genome. Venter JC, et al. Science, 2001 Feb 16. PMID 11181995
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • FLJ34874

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147976.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC079154
    Related
    ENST00000438816.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    124011934..124025174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    124449396..124462639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases