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LOC107985792 uncharacterized LOC107985792 [ Homo sapiens (human) ]

Gene ID: 107985792, updated on 10-Oct-2023

Summary

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Gene symbol
LOC107985792
Gene description
uncharacterized LOC107985792
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985792 in Genome Data Viewer
Location:
2p24.1
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (23018105..23198929, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (23053700..23234493, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (23240977..23421800, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 27 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr2:23168753-23169252 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr2:23169347-23170123 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:23192870-23193800 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:23207307-23207925 Neighboring gene uncharacterized LOC124908057 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr2:23300370-23301569 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:23326863-23328062 Neighboring gene Sharpr-MPRA regulatory region 10936 Neighboring gene uncharacterized LOC107985858 Neighboring gene uncharacterized LOC102723389 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:23453551-23454248 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:23520344-23520844 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15410 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:23570305-23570998 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15411 Neighboring gene Sharpr-MPRA regulatory region 13479 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11216 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11217 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11218 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11219 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11220 Neighboring gene long intergenic non-protein coding RNA 2923 Neighboring gene kelch like family member 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Clone Names

  • AC016768.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_171639.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC016768, AC018467

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    23018105..23198929 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    23053700..23234493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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