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TRE-TTC4-1 tRNA-Glu (anticodon TTC) 4-1 [ Homo sapiens (human) ]

Gene ID: 107985758, updated on 10-Oct-2023

Summary

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Official Symbol
TRE-TTC4-1provided by HGNC
Official Full Name
tRNA-Glu (anticodon TTC) 4-1provided by HGNC
Primary source
HGNC:HGNC:38581
See related
AllianceGenome:HGNC:38581
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAE44; TRNAE-UUC
Summary
This record represents a tRNA model predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).
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Genomic context

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Location:
1p36.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16535279..16535350, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (15976977..15977048, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene tRNA-Asn (anticodon GTT) 5-1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16858749-16859274 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16859275-16859800 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16860360-16861117 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16861118-16861874 Neighboring gene long intergenic non-protein coding RNA 1783 Neighboring gene RNA, U1 small nuclear 6, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16862789-16863635 Neighboring gene putative protein FAM231BP Neighboring gene tRNA-Gly (anticodon CCC) 1-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

General gene information

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Other Names

  • tRNA-Glu (TTC) 4-1
  • transfer RNA glutamic acid (anticodon UUC)
  • transfer RNA glutamic acid 44 (anticodon UUC)
  • transfer RNA-Glu (TTC) 4-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    16535279..16535350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791756.1 Reference GRCh38.p14 PATCHES

    Range
    339590..339661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    15976977..15977048 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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