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TRN-GTT5-1 tRNA-Asn (anticodon GTT) 5-1 [ Homo sapiens (human) ]

Gene ID: 107985757, updated on 10-Oct-2023

Summary

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Official Symbol
TRN-GTT5-1provided by HGNC
Official Full Name
tRNA-Asn (anticodon GTT) 5-1provided by HGNC
Primary source
HGNC:HGNC:38582
See related
AllianceGenome:HGNC:38582
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAN37; TRNAN-GUU
Summary
This record represents a tRNA model predicted using tRNAscan-SE (Lowe, T.M. and Eddy, S.R. 1997. Nucleic Acids Res. 25:955-964, PubMed 9023104).
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Genomic context

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Location:
1p36.13
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (16520585..16520658, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (15962283..15962356, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1772 Neighboring gene CROCC pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16816921-16817565 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16817566-16818209 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 331 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 332 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16839913-16840418 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16840419-16840924 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16840925-16841430 Neighboring gene RNA, U1 small nuclear 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16858749-16859274 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:16859275-16859800 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16860360-16861117 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:16861118-16861874 Neighboring gene tRNA-Glu (anticodon TTC) 4-1 Neighboring gene long intergenic non-protein coding RNA 1783 Neighboring gene RNA, U1 small nuclear 6, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Lowe TM, et al. Nucleic Acids Res, 1997 Mar 1. PMID 9023104, Free PMC Article
  2. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Chan PP, et al. Nucleic Acids Res, 2009 Jan. PMID 18984615, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

General gene information

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Other Names

  • tRNA-Asn (GTT) 5-1
  • transfer RNA asparagine (anticodon GUU)
  • transfer RNA asparagine 37 (anticodon GUU)
  • transfer RNA-Asn (GTT) 5-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    16520585..16520658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_025791756.1 Reference GRCh38.p14 PATCHES

    Range
    324888..324961 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    15962283..15962356 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
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