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CCDC188BP coiled-coil domain containing 188B, pseudogene [ Homo sapiens (human) ]

Gene ID: 107985555, updated on 28-Oct-2024

Summary

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Official Symbol
CCDC188BPprovided by HGNC
Official Full Name
coiled-coil domain containing 188B, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:56303
See related
AllianceGenome:HGNC:56303
Gene type
pseudo
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in prostate (RPKM 7.3), ovary (RPKM 2.4) and 2 other tissues See more
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Genomic context

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See CCDC188BP in Genome Data Viewer
Location:
22q11.23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (23392553..23396984)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (23815305..23817791)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2556 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr22:23709276-23710010 Neighboring gene carboxylesterase 5A pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23728238-23729220 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23730785-23731642 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23735088-23735588 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23741087-23741641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23741731-23742504 Neighboring gene ZDHHC8B, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23758527-23759161 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr22:23773427-23774272 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23777839-23778530 Neighboring gene long intergenic non-protein coding RNA 1659 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23792825-23793326 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:23793873-23794519 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:23802568-23803102 Neighboring gene family with sequence similarity 230 member I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    23392553..23396984
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187632.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    38511..42942
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    23815305..23817791
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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