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LOC107985537 uncharacterized LOC107985537 [ Homo sapiens (human) ]

Gene ID: 107985537, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985537
Gene description
uncharacterized LOC107985537
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985537 in Genome Data Viewer
Location:
22q13.31
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 22 NC_000022.11 (45457082..45458351, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 22 NC_060946.1 (45941928..45943197, complement)

Chromosome 22 - NC_000022.11Genomic Context describing neighboring genes Neighboring gene structural maintenance of chromosomes 1B Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:45809563-45810395 Neighboring gene RIB43A domain with coiled-coils 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45838232-45838794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45872155-45872654 Neighboring gene uncharacterized LOC105373066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45895138-45895774 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:45899377-45899990 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr22:45899991-45900604 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:45900605-45901218 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:45901219-45901832 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45901833-45902444 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:45911021-45911955 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:45920127-45920678 Neighboring gene fibulin 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr22:45924419-45924969 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45942415-45942916 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45942917-45943416 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr22:45944251-45945038 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 19228

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000022.11 Reference GRCh38.p14 Primary Assembly

    Range
    45457082..45458351 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755613.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060946.1 Alternate T2T-CHM13v2.0

    Range
    45941928..45943197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090711.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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