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LOC107985508 uncharacterized LOC107985508 [ Homo sapiens (human) ]

Gene ID: 107985508, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985508
Gene description
uncharacterized LOC107985508
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985508 in Genome Data Viewer
Location:
21q21.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (22209920..22403096)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (20577815..20759831)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene phosphoglycerate kinase 1 pseudogene Neighboring gene MED14-independent group 3 enhancer GRCh37_chr21:23561834-23563033 Neighboring gene RNA, U4 small nuclear 45, pseudogene Neighboring gene mitogen-activated protein kinase 6 pseudogene 2 Neighboring gene MPRA-validated peak4381 silencer Neighboring gene uncharacterized LOC107985494

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    22209920..22403096
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007067937.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    20577815..20759831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090079.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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