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LOC107985490 uncharacterized LOC107985490 [ Homo sapiens (human) ]

Gene ID: 107985490, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985490
Gene description
uncharacterized LOC107985490
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985490 in Genome Data Viewer
Location:
21q21.1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (19128637..19134175)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (17488273..17493812)

Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene MIR548X host gene Neighboring gene microRNA 548x Neighboring gene MPRA-validated peak4355 silencer Neighboring gene MPRA-validated peak4356 silencer Neighboring gene peptidylprolyl isomerase A pseudogene 22 Neighboring gene ReSE screen-validated silencer GRCh37_chr21:20299719-20299897 Neighboring gene H3K27ac hESC enhancer GRCh37_chr21:20359825-20360325 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr21:20492293-20493242 Neighboring gene MPRA-validated peak4361 silencer Neighboring gene MPRA-validated peak4362 silencer Neighboring gene uncharacterized LOC124905048 Neighboring gene solute carrier family 6 member 6 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

    Range
    19128637..19134175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001755097.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060945.1 Alternate T2T-CHM13v2.0

    Range
    17488273..17493812
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007090019.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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