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LOC107985460 uncharacterized LOC107985460 [ Homo sapiens (human) ]

Gene ID: 107985460, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985460
Gene description
uncharacterized LOC107985460
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985460 in Genome Data Viewer
Location:
1q32.2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (208467225..208487631)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (207714025..207734441)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene plexin A2 Neighboring gene uncharacterized LOC105372884 Neighboring gene Sharpr-MPRA regulatory region 12529 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:208416267-208416768 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:208416769-208417268 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1777 Neighboring gene uncharacterized LOC105372889 Neighboring gene uncharacterized LOC124904501 Neighboring gene NANOG hESC enhancer GRCh37_chr1:208443936-208444517 Neighboring gene MPRA-validated peak670 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:208547462-208548227 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:208551780-208552116 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:208586461-208586653 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_1772 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_1780 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_1801 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:208618537-208619736 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_1926 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:208774147-208774647 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2463 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_1994 Neighboring gene Neanderthal introgressed variant-containing enhancers experimental_2023 and experimental_2030 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_2148 Neighboring gene long intergenic non-protein coding RNA 1735 Neighboring gene long intergenic non-protein coding RNA 2769

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    208467225..208487631
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737819.1 RNA Sequence

  2. XR_001737818.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    207714025..207734441
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071042.1 RNA Sequence

  2. XR_007071041.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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