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LOC107985408 uncharacterized LOC107985408 [ Homo sapiens (human) ]

Gene ID: 107985408, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985408
Gene description
uncharacterized LOC107985408
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985408 in Genome Data Viewer
Location:
1p22.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (87500361..87528613)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (87343580..87371851)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378833 Neighboring gene uncharacterized LOC105378834 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1288 Neighboring gene RNA, 5S ribosomal pseudogene 52 Neighboring gene uncharacterized LOC105378835 Neighboring gene VISTA enhancer hs1161 Neighboring gene VISTA enhancer hs1217 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:88079486-88080685 Neighboring gene uncharacterized LOC107985518 Neighboring gene VISTA enhancer hs1002 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:88149733-88150234 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:88151217-88151832 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:88153692-88154891 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:88188659-88189364 Neighboring gene Sharpr-MPRA regulatory region 1395 Neighboring gene uncharacterized LOC124904212 Neighboring gene MPRA-validated peak307 silencer

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    87500361..87528613
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737795.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    87343580..87371851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070408.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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