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LOC107985372 uncharacterized LOC107985372 [ Homo sapiens (human) ]

Gene ID: 107985372, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985372
Gene description
uncharacterized LOC107985372
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985372 in Genome Data Viewer
Location:
1q44
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (244771265..244803772, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (244187565..244220078, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene desumoylating isopeptidase 2 Neighboring gene MPRA-validated peak808 silencer Neighboring gene ribosomal protein L37 pseudogene 8 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244892764-244893500 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244893501-244894238 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:244898381-244899580 Neighboring gene chromosome 1 open reading frame 202 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:244923887-244924533 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:244972422-244972922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2844 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244978837-244979663 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244979664-244980490 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:244996871-244997630 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2845 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2017 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2846 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2018 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2019 Neighboring gene cytochrome c oxidase assembly factor COX20 Neighboring gene small nucleolar RNA, H/ACA box 100 Neighboring gene heterogeneous nuclear ribonucleoprotein U

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    244771265..244803772 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738568.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    244187565..244220078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071261.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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