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LOC107985363 uncharacterized LOC107985363 [ Homo sapiens (human) ]

Gene ID: 107985363, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985363
Gene description
uncharacterized LOC107985363
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985363 in Genome Data Viewer
Location:
1q42.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (233957714..233967520)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (233344156..233352235)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985362 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:233843943-233845142 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:233859728-233860927 Neighboring gene uncharacterized LOC124904552 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:233865794-233866564 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:233866565-233867336 Neighboring gene solute carrier family 35 member F3 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:234109180-234109382 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:234159353-234160552 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr1:234208561-234209760 Neighboring gene Rac family small GTPase 1 pseudogene 7 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_6338 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:234289165-234289666 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:234323999-234324710 Neighboring gene Sharpr-MPRA regulatory region 1313 Neighboring gene uncharacterized LOC124904553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1966 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1967 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1968

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    233957714..233967520
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001738530.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    233344156..233352235
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007071203.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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