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ARHGEF2-AS2 ARHGEF2 antisense RNA 2 [ Homo sapiens (human) ]

Gene ID: 107985209, updated on 10-Oct-2023

Summary

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Official Symbol
ARHGEF2-AS2provided by HGNC
Official Full Name
ARHGEF2 antisense RNA 2provided by HGNC
Primary source
HGNC:HGNC:55175
See related
AllianceGenome:HGNC:55175
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in spleen (RPKM 1.5), lymph node (RPKM 1.2) and 22 other tissues See more
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Genomic context

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See ARHGEF2-AS2 in Genome Data Viewer
Location:
1q22
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (155978639..155982988)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (155116756..155121105)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:155911483-155911982 Neighboring gene relaxin family peptide/INSL5 receptor 4 Neighboring gene Rho/Rac guanine nucleotide exchange factor 2 Neighboring gene microRNA 6738 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1410 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:155931313-155932512 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:155937888-155938119 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1825 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1826 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1827 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1828 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:155946115-155946616 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1829 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1411 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1412 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1830 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:155949474-155950095 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1832 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:155953219-155953718 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1833 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1834 Neighboring gene ARHGEF2 antisense RNA 1 Neighboring gene signal sequence receptor subunit 2 Neighboring gene uncharacterized LOC105371729

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_183459.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355388

  2. NR_183460.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355388

  3. NR_183461.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355388

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    155978639..155982988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    155116756..155121105
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases