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LOC107985165 uncharacterized LOC107985165 [ Homo sapiens (human) ]

Gene ID: 107985165, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985165
Gene description
uncharacterized LOC107985165
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985165 in Genome Data Viewer
Location:
18p11.32
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (951129..1061536)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (1105427..1215748)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904340 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:907717-908438 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:909161-909882 Neighboring gene adenylate cyclase activating polypeptide 1 Neighboring gene long intergenic non-protein coding RNA 1904 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:949337-949911 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr18:949912-950485 Neighboring gene Sharpr-MPRA regulatory region 14540 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr18:1011056-1012255 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:1015112-1015673 Neighboring gene uncharacterized LOC105371953 Neighboring gene solute carrier family 25 member 3 pseudogene 3 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    951129..1061536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001753317.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    1105427..1215748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007088299.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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