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LOC107985043 uncharacterized LOC107985043 [ Homo sapiens (human) ]

Gene ID: 107985043, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107985043
Gene description
uncharacterized LOC107985043
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107985043 in Genome Data Viewer
Location:
1p31.1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (83516735..83574093)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (83357067..83414407)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378816 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:83893396-83893919 Neighboring gene long intergenic non-protein coding RNA 1712 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1242 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1243 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1244 Neighboring gene long intergenic non-protein coding RNA 1725 Neighboring gene ARF GTPase 4 pseudogene 5 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:84157955-84158489 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:84158490-84159025 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1008 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1245 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1009 Neighboring gene uncharacterized LOC101927560 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1010 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1011 Neighboring gene tubulin tyrosine ligase like 7 Neighboring gene TTLL7 intronic transcript 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General protein information

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Preferred Names
uncharacterized protein LOC107985043

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    83516735..83574093
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047437626.1 → XP_047293582.1  uncharacterized protein LOC107985043 isoform X1

  2. XM_047437627.1 → XP_047293583.1  uncharacterized protein LOC107985043 isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    83357067..83414407
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047443668.1 → XP_047299624.1  uncharacterized protein LOC107985043 isoform X1

  2. XM_047443669.1 → XP_047299625.1  uncharacterized protein LOC107985043 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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