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LOC107984935 uncharacterized LOC107984935 [ Homo sapiens (human) ]

Gene ID: 107984935, updated on 22-Oct-2024

Summary

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Gene symbol
LOC107984935
Gene description
uncharacterized LOC107984935
See related
Ensembl:ENSG00000308292
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984935 in Genome Data Viewer
Location:
1p35.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (31155046..31156134)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (31007192..31007975)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene UPF0764 protein C16orf89-like Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31583561-31584502 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31585445-31586385 Neighboring gene ribosomal protein L21 pseudogene 22 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31595033-31595534 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31626486-31627123 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:31627124-31627760 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 565 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:31628398-31629033 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31636659-31637158 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31639725-31640224 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 566 Neighboring gene Sharpr-MPRA regulatory region 5533 Neighboring gene sodium/potassium transporting ATPase interacting 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31671341-31671841 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:31688981-31689480 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:31695101-31695601 Neighboring gene small nuclear ribonucleoprotein U5 subunit 40 Neighboring gene MPRA-validated peak156 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 641

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    31155046..31156134
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001737961.2 RNA Sequence

    Related
    ENST00000833011.1

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    31007192..31007975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007070020.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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