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MMP2-AS1 MMP2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107984884, updated on 10-Oct-2023

Summary

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Official Symbol
MMP2-AS1provided by HGNC
Official Full Name
MMP2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:53142
See related
AllianceGenome:HGNC:53142
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in spleen (RPKM 2.0), lymph node (RPKM 0.7) and 8 other tissues See more
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Genomic context

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Location:
16q12.2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (55426797..55462297, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (61224956..61260437, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (55460709..55496209, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene ribosomal protein L31 pseudogene 56 Neighboring gene uncharacterized LOC105371279 Neighboring gene VISTA enhancer hs23 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:55503673-55504564 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:55504565-55505455 Neighboring gene NANOG hESC enhancer GRCh37_chr16:55508340-55508859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:55536405-55536906 Neighboring gene matrix metallopeptidase 2 Neighboring gene lysophosphatidylcholine acyltransferase 2 Neighboring gene calpain small subunit 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Distinct expression profiles of lncRNAs between early-onset preeclampsia and preterm controls. Long W, et al. Clin Chim Acta, 2016 Dec 1. PMID 27816668
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_147198.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007336, CA426152, DA363209

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    55426797..55462297 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    61224956..61260437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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