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LOC107984577 uncharacterized LOC107984577 [ Homo sapiens (human) ]

Gene ID: 107984577, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984577
Gene description
uncharacterized LOC107984577
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in lymph node (RPKM 1.7), appendix (RPKM 0.6) and 11 other tissues See more
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Genomic context

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See LOC107984577 in Genome Data Viewer
Location:
13q12.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (30445745..30448973)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (29666162..29671381)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5231 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5232 Neighboring gene long intergenic non-protein coding RNA 1058 Neighboring gene ubiquitin conjugating enzyme E2 L5 Neighboring gene ReSE screen-validated silencer GRCh37_chr13:31019111-31019302 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:31019769-31020654 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5233 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:31039481-31040256 Neighboring gene H3K27ac hESC enhancer GRCh37_chr13:31040257-31041032 Neighboring gene high mobility group box 1 Neighboring gene RNA binding motif protein 22 pseudogene 2 Neighboring gene microfibril associated protein 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

    Range
    30445745..30448973
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749803.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060937.1 Alternate T2T-CHM13v2.0

    Range
    29666162..29671381
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007083580.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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