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LINC02955 long intergenic non-protein coding RNA 2955 [ Homo sapiens (human) ]

Gene ID: 107984516, updated on 26-Mar-2024

Summary

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Official Symbol
LINC02955provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 2955provided by HGNC
Primary source
HGNC:HGNC:55973
See related
Ensembl:ENSG00000256995
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC02955 in Genome Data Viewer
Location:
12p12.1
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (22699859..23191587)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (22571316..23063162)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 30-like Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6099 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6100 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr12:22778539-22779228 Neighboring gene ETNK1 divergent transcript Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:22852449-22852990 Neighboring gene MPRA-validated peak1602 silencer Neighboring gene ethanolamine kinase 1 Neighboring gene ribosomal protein S27 pseudogene 22 Neighboring gene MPRA-validated peak1603 silencer Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:23178329-23179078 Neighboring gene VISTA enhancer hs1603 Neighboring gene MPRA-validated peak1605 silencer Neighboring gene Sharpr-MPRA regulatory region 9485 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:23627288-23627862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:23627863-23628437 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:23662216-23662400 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_26611 Neighboring gene NANOG hESC enhancer GRCh37_chr12:23695058-23695588 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:23738604-23739190 Neighboring gene uncharacterized LOC105369697 Neighboring gene Sharpr-MPRA regulatory region 8728 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:23793632-23794207 Neighboring gene SRY-box transcription factor 5 Neighboring gene NANOG hESC enhancer GRCh37_chr12:23909365-23909887 Neighboring gene MPRA-validated peak1610 silencer Neighboring gene MPRA-validated peak1611 silencer Neighboring gene MPRA-validated peak1613 silencer Neighboring gene Sharpr-MPRA regulatory region 3652 Neighboring gene Sharpr-MPRA regulatory region 12792 Neighboring gene VISTA enhancer hs895 Neighboring gene MPRA-validated peak1614 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4290 Neighboring gene microRNA 920

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

Genotypes

General gene information

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Clone Names

  • FLJ25451

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_120471.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC087235

  2. NR_187497.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084819, AC087241

  3. NR_187498.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084819, AC087241

  4. NR_187499.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084819, AC087241

  5. NR_187500.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  6. NR_187501.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  7. NR_187503.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  8. NR_187505.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310
    Related
    ENST00000625240.2

  9. NR_187507.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310
    Related
    ENST00000538317.6

  10. NR_187508.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  11. NR_187509.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  12. NR_187510.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087241, AC087258, AC087310

  13. NR_187511.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  14. NR_187512.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  15. NR_187513.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  16. NR_187514.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

  17. NR_187515.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC084816, AC087235, AC087241, AC087258, AC087310

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    22699859..23191587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    22571316..23063162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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