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LOC107984398 uncharacterized LOC107984398 [ Homo sapiens (human) ]

Gene ID: 107984398, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984398
Gene description
uncharacterized LOC107984398
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984398 in Genome Data Viewer
Location:
11q23.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (119578724..119583149, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (119600761..119605181, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene USP2 antisense RNA 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119290361-119290928 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119292628-119293194 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119293195-119293760 Neighboring gene Thy-1 cell surface antigen Neighboring gene double homeobox A pseudogene 5 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119344129-119344629 Neighboring gene Sharpr-MPRA regulatory region 12960 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119347323-119347824 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119347825-119348324 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119368781-119369640 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3981 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:119381879-119382068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119404367-119404896 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119417323-119418037 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119430656-119431156 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119431157-119431657 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 5631 Neighboring gene uncharacterized LOC124902770 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:119456019-119456834 Neighboring gene NANOG hESC enhancer GRCh37_chr11:119484842-119485365 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119486841-119487430 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119488611-119489198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119493452-119494328 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119494329-119495203 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119498707-119499582 Neighboring gene keratin 8 pseudogene 7 Neighboring gene uncharacterized LOC105369520 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:119507935-119508436 Neighboring gene nectin cell adhesion molecule 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    119578724..119583149 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001748412.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    119600761..119605181 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081626.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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