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LOC107984372 uncharacterized LOC107984372 [ Homo sapiens (human) ]

Gene ID: 107984372, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984372
Gene description
uncharacterized LOC107984372
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107984372 in Genome Data Viewer
Location:
11q23.3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (116626021..116639314, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (116640120..116653386, complement)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107987166 Neighboring gene small nucleolar RNA U13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116201553-116202053 Neighboring gene Sharpr-MPRA regulatory region 3214 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116228067-116228930 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116228931-116229794 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116230668-116231168 Neighboring gene H3K27ac hESC enhancer GRCh37_chr11:116237776-116238513 Neighboring gene Sharpr-MPRA regulatory region 8002 Neighboring gene Sharpr-MPRA regulatory region 10278 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:116314992-116315809 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:116315810-116316626 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr11:116316627-116317444 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:116320808-116321353 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116329609-116330153 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116369918-116370610 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116375709-116376258 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116377349-116377849 Neighboring gene long intergenic non-protein coding RNA 2151 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116406562-116407062 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116407063-116407563 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:116451429-116452038 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116452039-116452648 Neighboring gene ReSE screen-validated silencer GRCh37_chr11:116452758-116452938 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116507034-116507534 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116511441-116512270 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:116512271-116513100 Neighboring gene VISTA enhancer hs1632 Neighboring gene long intergenic non-protein coding RNA 2702 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:116558341-116558903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr11:116558904-116559465 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr11:116580386-116581272 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3921 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3922 Neighboring gene BUD13 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    116626021..116639314 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001748078.1 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    116640120..116653386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081606.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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