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LOC107984293 uncharacterized LOC107984293 [ Homo sapiens (human) ]

Gene ID: 107984293, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107984293
Gene description
uncharacterized LOC107984293
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in thyroid (RPKM 1.2), ovary (RPKM 1.2) and 23 other tissues See more
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Genomic context

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See LOC107984293 in Genome Data Viewer
Location:
10q22.2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (75426099..75431610, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (76300149..76305660, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene zinc finger protein 503 Neighboring gene VISTA enhancer hs484 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:77165968-77166707 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:77166708-77167448 Neighboring gene uncharacterized LOC101929234 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:77191190-77191690 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:77191691-77192191 Neighboring gene ZNF503 antisense RNA 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:77210325-77211210 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:77234571-77235319 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr10:77235320-77236067 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:77297811-77298425 Neighboring gene leucine rich melanocyte differentiation associated Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr10:77356902-77357728 Neighboring gene NANOG hESC enhancer GRCh37_chr10:77359991-77360570 Neighboring gene microRNA 606 Neighboring gene uncharacterized LOC105378367 Neighboring gene ReSE screen-validated silencer GRCh37_chr10:77488076-77488220

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    75426099..75431610 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001747703.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    76300149..76305660 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007081524.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases