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LOC107983989 uncharacterized LOC107983989 [ Homo sapiens (human) ]

Gene ID: 107983989, updated on 17-Sep-2024

Summary

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Gene symbol
LOC107983989
Gene description
uncharacterized LOC107983989
Gene type
protein coding
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LOC107983989 in Genome Data Viewer
Location:
10p15.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (2497765..2502169, complement)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:2356765-2357964 Neighboring gene uncharacterized LOC105376349 Neighboring gene long intergenic non-protein coding RNA 701 Neighboring gene long intergenic non-protein coding RNA 2645 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:2518769-2519456 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:2519457-2520142 Neighboring gene uncharacterized LOC105376350 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:2617610-2618209 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:2714425-2714926 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:2714927-2715426 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr10:2848111-2848728 Neighboring gene MPRA-validated peak843 silencer Neighboring gene OCT4-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:2907546-2908396 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:2908397-2909247 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr10:2964441-2965640 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:2971572-2972141 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:2976328-2976864 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:3005950-3006496 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr10:3006497-3007043 Neighboring gene uncharacterized LOC105376352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:3026909-3027408 Neighboring gene uncharacterized LOC124902532 Neighboring gene VISTA enhancer hs1958

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000010.11 Chromosome 10 Reference GRCh38.p14 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

Genotypes

General protein information

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Preferred Names
uncharacterized protein LOC107983989

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    2497765..2502169 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011519770.3 → XP_011518072.1  uncharacterized protein LOC107983989

    Conserved Domains (1) summary
    PTZ00121
    Location:4 → 133
    PTZ00121; MAEBL; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases