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CAPS2-AS1 CAPS2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 107983975, updated on 17-Sep-2024

Summary

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Official Symbol
CAPS2-AS1provided by HGNC
Official Full Name
CAPS2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:40769
See related
AllianceGenome:HGNC:40769
Gene type
ncRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See CAPS2-AS1 in Genome Data Viewer
Location:
12q21.1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (75258190..75298285)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (75232823..75272886)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily C member 2 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr12:75600794-75601495 Neighboring gene uncharacterized LOC100130268 Neighboring gene cyclin G2 pseudogene 1 Neighboring gene necdin, MAGE family member pseudogene Neighboring gene calcyphosine 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6667 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 4661 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:75734995-75735496 Neighboring gene H3K27ac hESC enhancer GRCh37_chr12:75735497-75735996 Neighboring gene GLIPR1 like 1 Neighboring gene uncharacterized LOC124902968

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

    Range
    75258190..75298285
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001749212.2 RNA Sequence

  2. XR_001749213.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060936.1 Alternate T2T-CHM13v2.0

    Range
    75232823..75272886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_007082850.1 RNA Sequence

  2. XR_007082851.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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