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Ocel1 occludin/ELL domain containing 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 107977024, updated on 14-Mar-2024

Summary

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Gene symbol
Ocel1
Gene description
occludin/ELL domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See Ocel1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613716.1 (1706417..1708921, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (247597206..247599010)

NW_003613716.1Genomic Context describing neighboring genes Neighboring gene USH1 protein network component harmonin binding protein 1 Neighboring gene uncharacterized LOC118239522 Neighboring gene nuclear receptor subfamily 2 group F member 6 Neighboring gene unconventional SNARE in the ER 1 Neighboring gene myosin IXB

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apical plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
occludin/ELL domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613716.1 Reference CriGri_1.0 Primary Assembly

    Range
    1706417..1708921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016974043.3 → XP_016829532.2  occludin/ELL domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MDL8, A0A9J7F4Z4
    Conserved Domains (1) summary
    pfam07303
    Location:131 → 230
    Occludin_ELL; Occludin homology domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    247597206..247599010
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027394826.2 → XP_027250627.1  occludin/ELL domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2MDL8, A0A9J7F4Z4
    Conserved Domains (1) summary
    pfam07303
    Location:131 → 230
    Occludin_ELL; Occludin homology domain
Nucleotide Protein Strain
Heading Accession and Version

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