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VPS26B VPS26, retromer complex component B [ Pan troglodytes (chimpanzee) ]

Gene ID: 107966230, updated on 17-Aug-2024

Summary

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Official Symbol
VPS26Bprovided by VGNC
Official Full Name
VPS26, retromer complex component Bprovided by VGNC
Primary source
VGNC:VGNC:942
Locus tag
CK820_G0015367
See related
Ensembl:ENSPTRG00000050904
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See VPS26B in Genome Data Viewer
Location:
chromosome: 9
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (136186348..136209341)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (135402558..135425457)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene junctional adhesion molecule 3 Neighboring gene protein tyrosine phosphatase type IVA 2-like Neighboring gene zinc finger protein 628-like Neighboring gene non-SMC condensin II complex subunit D3 Neighboring gene thymocyte nuclear protein 1 Neighboring gene acyl-CoA dehydrogenase family member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in retrograde transport, endosome to Golgi IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 26B
Names
vacuolar protein sorting 26 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    136186348..136209341
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016922400.4 → XP_016777889.2  vacuolar protein sorting-associated protein 26B isoform X1

    UniProtKB/TrEMBL
    A0A2I3RSX4, A0A2J8N0V4, A0A8I3B2Y7, K7A160, K7A5G9
    Conserved Domains (1) summary
    pfam03643
    Location:6 → 281
    Vps26; Vacuolar protein sorting-associated protein 26

  2. XM_063784612.1 → XP_063640682.1  vacuolar protein sorting-associated protein 26B isoform X2

  3. XM_063784613.1 → XP_063640683.1  vacuolar protein sorting-associated protein 26B isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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