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LOC107949925 pectate lyase [ Gossypium hirsutum (cotton) ]

Gene ID: 107949925, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107949925
Gene description
pectate lyase
Locus tag
ERO13_D03G091400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107949925 in Genome Data Viewer
Location:
chromosome: D03
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D03 NC_053439.1 (37628594..37631485)

Chromosome D03 - NC_053439.1Genomic Context describing neighboring genes Neighboring gene hypersensitive-induced reaction 1 protein Neighboring gene pectate lyase Neighboring gene tRNase Z TRZ1 Neighboring gene delta-1-pyrroline-5-carboxylate dehydrogenase 12A1, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053439.1 Chromosome D03 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053439.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    37628594..37631485
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016884686.2 → XP_016740175.2  pectate lyase

    UniProtKB/TrEMBL
    A0A1U8NMR9
    Conserved Domains (1) summary
    smart00656
    Location:162 → 356
    Amb_all; Amb_all domain
Nucleotide Protein
Heading Accession and Version

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