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LOC107949631 probable alpha-mannosidase At5g13980 [ Gossypium hirsutum (cotton) ]

Gene ID: 107949631, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107949631
Gene description
probable alpha-mannosidase At5g13980
Locus tag
ERO13_D03G110200v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107949631 in Genome Data Viewer
Location:
chromosome: D03
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D03 NC_053439.1 (43494434..43503896, complement)

Chromosome D03 - NC_053439.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121215501 Neighboring gene pentatricopeptide repeat-containing protein At5g61990, mitochondrial Neighboring gene ADP-ribosylation factor GTPase-activating protein AGD1 Neighboring gene uncharacterized LOC107949879 Neighboring gene uncharacterized LOC107949630

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053439.1 Chromosome D03 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-mannosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mannose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable alpha-mannosidase At5g13980

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053439.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    43494434..43503896 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016884367.2 → XP_016739856.2  probable alpha-mannosidase At5g13980

    UniProtKB/TrEMBL
    A0A1U8NLH1
    Conserved Domains (2) summary
    PLN02701
    Location:37 → 819
    PLN02701; alpha-mannosidase
    cd10810
    Location:38 → 314
    GH38N_AMII_LAM_like; N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)
Nucleotide Protein
Heading Accession and Version

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