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LOC107948895 pectin acetylesterase 5 [ Gossypium hirsutum (cotton) ]

Gene ID: 107948895, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107948895
Gene description
pectin acetylesterase 5
Locus tag
ERO13_A04G080800v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107948895 in Genome Data Viewer
Location:
chromosome: A04
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A04 NC_053427.1 (72783628..72786841)

Chromosome A04 - NC_053427.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107949368 Neighboring gene dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase-like Neighboring gene uncharacterized LOC107949370 Neighboring gene metallothionein-like protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053427.1 Chromosome A04 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectin acetylesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectin acetylesterase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053427.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    72783628..72786841
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016883556.2 → XP_016739045.1  pectin acetylesterase 5 isoform X2

    UniProtKB/TrEMBL
    A0A1U8IQS3, A0A1U8NJM9
    Conserved Domains (1) summary
    pfam03283
    Location:50 → 405
    PAE; Pectinacetylesterase

  2. XM_016883554.2 → XP_016739043.1  pectin acetylesterase 5 isoform X1

    UniProtKB/TrEMBL
    A0A1U8NLY3, A0A1U8NMB0
    Conserved Domains (1) summary
    pfam03283
    Location:90 → 445
    PAE; Pectinacetylesterase

  3. XM_016883555.2 → XP_016739044.2  pectin acetylesterase 5 isoform X3

    UniProtKB/TrEMBL
    A0A1U8IQS3
Nucleotide Protein
Heading Accession and Version

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