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LOC107947823 xyloglucan endotransglucosylase/hydrolase protein 24 [ Gossypium hirsutum (cotton) ]

Gene ID: 107947823, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107947823
Gene description
xyloglucan endotransglucosylase/hydrolase protein 24
Locus tag
ERO13_D11G233200v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107947823 in Genome Data Viewer
Location:
chromosome: D11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D11 NC_053447.1 (42407229..42408512, complement)

Chromosome D11 - NC_053447.1Genomic Context describing neighboring genes Neighboring gene DNA-directed RNA polymerases I and III subunit RPAC1-like Neighboring gene WAT1-related protein At5g64700 Neighboring gene uncharacterized LOC107948415 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053447.1 Chromosome D11 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: xyloglucan endotransglucosylase/hydrolase protein 24

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053447.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    42407229..42408512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016882340.2 → XP_016737829.2  LOW QUALITY PROTEIN: xyloglucan endotransglucosylase/hydrolase protein 24

    Conserved Domains (1) summary
    cd02176
    Location:27 → 287
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
Nucleotide Protein
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