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LOC107941775 pectate lyase [ Gossypium hirsutum (cotton) ]

Gene ID: 107941775, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107941775
Gene description
pectate lyase
Locus tag
ERO13_A04G015550v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107941775 in Genome Data Viewer
Location:
chromosome: A04
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A04 NC_053427.1 (2148797..2151144)

Chromosome A04 - NC_053427.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA R71 Neighboring gene polygalacturonase-like Neighboring gene cyanidin 3-O-galactoside 2''-O-xylosyltransferase FGGT1 Neighboring gene transfer RNA serine (anticodon GCU)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053427.1 Chromosome A04 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectate lyase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectate lyase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053427.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    2148797..2151144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016875387.2 → XP_016730876.1  pectate lyase

    UniProtKB/TrEMBL
    A0A1U8MVL3
    Conserved Domains (2) summary
    smart00656
    Location:175 → 370
    Amb_all; Amb_all domain
    pfam04431
    Location:22 → 86
    Pec_lyase_N; Pectate lyase, N-terminus
Nucleotide Protein
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