U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107933994 polygalacturonase-like [ Gossypium hirsutum (cotton) ]

Gene ID: 107933994, updated on 12-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107933994
Gene description
polygalacturonase-like
Locus tag
ERO13_A07G086700v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107933994 in Genome Data Viewer
Location:
chromosome: A07
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A07 NC_053430.1 (14651854..14654425)

Chromosome A07 - NC_053430.1Genomic Context describing neighboring genes Neighboring gene polygalacturonase-like Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC107933991 Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053430.1 Chromosome A07 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
polygalacturonase-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053430.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    14651854..14654425
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041117615.1 → XP_040973549.1  polygalacturonase-like isoform X1

    UniProtKB/TrEMBL
    A0A1U8HIV5, A0A1U8M4R8, A0A1U8NX05, D3VSM7
    Conserved Domains (1) summary
    cl19188
    Location:46 → 410
    PL-6; Polysaccharide Lyase Family 6

  2. XM_016866317.2 → XP_016721806.1  polygalacturonase-like isoform X1

    UniProtKB/TrEMBL
    A0A1U8HIV5, A0A1U8M4R8, A0A1U8NX05, D3VSM7
    Conserved Domains (1) summary
    cl19188
    Location:46 → 410
    PL-6; Polysaccharide Lyase Family 6

  3. XM_016866318.2 → XP_016721807.1  polygalacturonase-like isoform X2

    UniProtKB/TrEMBL
    A0A1U8HIV5, A0A1U8M4S0, A0A1U8NX05, D3VSM7
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases