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LOC107933851 laccase-2 [ Gossypium hirsutum (cotton) ]

Gene ID: 107933851, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107933851
Gene description
laccase-2
Locus tag
ERO13_D13G232400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107933851 in Genome Data Viewer
Location:
chromosome: D13
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D13 NC_053449.1 (64417432..64422083)

Chromosome D13 - NC_053449.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At5g59600 Neighboring gene E3 ubiquitin-protein ligase SDIR1 Neighboring gene TBC1 domain family member 5 homolog B Neighboring gene factor of DNA methylation 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053449.1 Chromosome D13 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053449.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    64417432..64422083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016866179.2 → XP_016721668.2  laccase-2

    UniProtKB/TrEMBL
    A0A1U8M7M4
    Conserved Domains (1) summary
    TIGR03389
    Location:36 → 577
    laccase; plant
Nucleotide Protein
Heading Accession and Version

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