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LOC107931589 isoamylase 1, chloroplastic [ Gossypium hirsutum (cotton) ]

Gene ID: 107931589, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107931589
Gene description
isoamylase 1, chloroplastic
Locus tag
ERO13_D04G007100v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107931589 in Genome Data Viewer
Location:
chromosome: D04
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D04 NC_053440.1 (1228291..1253050, complement)

Chromosome D04 - NC_053440.1Genomic Context describing neighboring genes Neighboring gene choline monooxygenase, chloroplastic Neighboring gene uncharacterized LOC107931612 Neighboring gene nucleolar and coiled-body phosphoprotein 1 Neighboring gene auxin response factor 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053440.1 Chromosome D04 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoamylase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053440.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    1228291..1253050 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016863520.2 → XP_016719009.1  isoamylase 1, chloroplastic

    UniProtKB/TrEMBL
    A0A1U8JD05, A0A1U8M0E9
    Conserved Domains (2) summary
    cd02856
    Location:81 → 227
    E_set_GDE_Isoamylase_N; N-terminal Early set domain associated with the catalytic domain of Glycogen debranching enzyme and bacterial isoamylase (also called glycogen 6-glucanohydrolase)
    cd11326
    Location:208 → 664
    AmyAc_Glg_debranch; Alpha amylase catalytic domain found in glycogen debranching enzymes

RNA

  1. XR_005912304.1 RNA Sequence

  2. XR_001693270.2 RNA Sequence

  3. XR_001693271.2 RNA Sequence

  4. XR_005912305.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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