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LOC107926997 probable pectinesterase 53 [ Gossypium hirsutum (cotton) ]

Gene ID: 107926997, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107926997
Gene description
probable pectinesterase 53
Locus tag
ERO13_A12G061200v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107926997 in Genome Data Viewer
Location:
chromosome: A12
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A12 NC_053435.1 (14285282..14287601)

Chromosome A12 - NC_053435.1Genomic Context describing neighboring genes Neighboring gene B-box zinc finger protein 19 Neighboring gene fructose-bisphosphate aldolase 1, chloroplastic Neighboring gene protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic Neighboring gene protein FMP32, mitochondrial Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053435.1 Chromosome A12 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pectin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable pectinesterase 53

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053435.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    14285282..14287601
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016857957.2 → XP_016713446.2  probable pectinesterase 53

    UniProtKB/TrEMBL
    A0A1U8LFR8
    Conserved Domains (1) summary
    PLN02682
    Location:5 → 359
    PLN02682; pectinesterase family protein
Nucleotide Protein
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