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LOC107925642 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [ Gossypium hirsutum (cotton) ]

Gene ID: 107925642, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107925642
Gene description
1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic
Locus tag
ERO13_A01G207900v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107925642 in Genome Data Viewer
Location:
chromosome: A01
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A01 NC_053424.1 (116956009..116966813)

Chromosome A01 - NC_053424.1Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein P2A Neighboring gene monodehydroascorbate reductase Neighboring gene structural maintenance of chromosomes protein 1A Neighboring gene small nucleolar RNA R71

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053424.1 Chromosome A01 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in starch metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053424.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    116956009..116966813
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016856354.2 → XP_016711843.2  1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A1U8LEP4
    Conserved Domains (1) summary
    PLN02447
    Location:94 → 837
    PLN02447; 1,4-alpha-glucan-branching enzyme
Nucleotide Protein
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