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LOC107920633 non-lysosomal glucosylceramidase [ Gossypium hirsutum (cotton) ]

Gene ID: 107920633, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107920633
Gene description
non-lysosomal glucosylceramidase
Locus tag
ERO13_D13G119400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107920633 in Genome Data Viewer
Location:
chromosome: D13
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D13 NC_053449.1 (41033009..41046346)

Chromosome D13 - NC_053449.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121225416 Neighboring gene uncharacterized LOC107919676 Neighboring gene uncharacterized LOC107918532 Neighboring gene uncharacterized LOC121225417

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053449.1 Chromosome D13 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables glucosylceramidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glucosylceramide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-lysosomal glucosylceramidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053449.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    41033009..41046346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016850441.2 → XP_016705930.1  non-lysosomal glucosylceramidase

    UniProtKB/TrEMBL
    A0A1U8KU05
    Conserved Domains (2) summary
    pfam04685
    Location:524 → 884
    DUF608; Glycosyl-hydrolase family 116, catalytic region
    pfam12215
    Location:92 → 408
    Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
Nucleotide Protein
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