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LOC107918279 alpha-galactosidase [ Gossypium hirsutum (cotton) ]

Gene ID: 107918279, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107918279
Gene description
alpha-galactosidase
Locus tag
ERO13_D13G058900v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107918279 in Genome Data Viewer
Location:
chromosome: D13
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D13 NC_053449.1 (8438581..8449805)

Chromosome D13 - NC_053449.1Genomic Context describing neighboring genes Neighboring gene pheophytinase, chloroplastic Neighboring gene uncharacterized LOC121225753 Neighboring gene sphingoid long-chain bases kinase 1 Neighboring gene ABC transporter B family member 14-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053449.1 Chromosome D13 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plant-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-galactosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053449.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    8438581..8449805
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016847801.2 → XP_016703290.1  alpha-galactosidase

    UniProtKB/TrEMBL
    A0A1U8KLI3
    Conserved Domains (1) summary
    cl38930
    Location:31 → 407
    AmyAc_family; Alpha amylase catalytic domain family
Nucleotide Protein
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