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LOC107918135 probable rhamnogalacturonate lyase B [ Gossypium hirsutum (cotton) ]

Gene ID: 107918135, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107918135
Gene description
probable rhamnogalacturonate lyase B
Locus tag
ERO13_A01G125950v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107918135 in Genome Data Viewer
Location:
chromosome: A01
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A01 NC_053424.1 (33924388..33929019)

Chromosome A01 - NC_053424.1Genomic Context describing neighboring genes Neighboring gene XIAP-associated factor 1 Neighboring gene probable rhamnogalacturonate lyase B Neighboring gene GATA transcription factor 24 Neighboring gene uncharacterized LOC107916559

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053424.1 Chromosome A01 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable rhamnogalacturonate lyase B; uncharacterized protein LOC107918135

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053424.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    33924388..33929019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016847665.2 → XP_016703154.1  probable rhamnogalacturonate lyase B isoform X2

    UniProtKB/TrEMBL
    A0A1U8KL38, A0A1U8KR11
    Conserved Domains (3) summary
    cd10316
    Location:335 → 434
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    pfam14683
    Location:444 → 632
    CBM-like; Polysaccharide lyase family 4, domain III
    cl15675
    Location:5 → 203
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase

  2. XM_041104721.1 → XP_040960655.1  uncharacterized protein LOC107918135 isoform X3

    UniProtKB/TrEMBL
    A0A1U8KL38
    Conserved Domains (3) summary
    cd10317
    Location:455 → 588
    RGL4_C; C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cl15675
    Location:40 → 228
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cl21470
    Location:360 → 404
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain

  3. XM_041104655.1 → XP_040960589.1  probable rhamnogalacturonate lyase B isoform X1

    UniProtKB/TrEMBL
    A0A1U8KL38
    Conserved Domains (3) summary
    cd10316
    Location:360 → 459
    RGL4_M; Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cd10317
    Location:471 → 658
    RGL4_C; C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase
    cl15675
    Location:40 → 228
    RGL4_N; N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase

RNA

  1. XR_005920723.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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