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LOC107916022 polygalacturonase [ Gossypium hirsutum (cotton) ]

Gene ID: 107916022, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107916022
Gene description
polygalacturonase
Locus tag
ERO13_D10G198400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107916022 in Genome Data Viewer
Location:
chromosome: D10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D10 NC_053446.1 (57840370..57842303, complement)

Chromosome D10 - NC_053446.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107915188 Neighboring gene small nucleolar RNA R44/J54/Z268 family Neighboring gene uncharacterized LOC107915189 Neighboring gene polygalacturonase Neighboring gene polygalacturonase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053446.1 Chromosome D10 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053446.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    57840370..57842303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016845190.2 → XP_016700679.1  polygalacturonase

    UniProtKB/TrEMBL
    A0A1U8KJ09
    Conserved Domains (1) summary
    cl19188
    Location:14 → 396
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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