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LOC107903730 pectinesterase [ Gossypium hirsutum (cotton) ]

Gene ID: 107903730, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107903730
Gene description
pectinesterase
Locus tag
ERO13_A01G145400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107903730 in Genome Data Viewer
Location:
chromosome: A01
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A01 NC_053424.1 (82405756..82407945, complement)

Chromosome A01 - NC_053424.1Genomic Context describing neighboring genes Neighboring gene probable phosphoglucomutase, cytoplasmic 1 Neighboring gene uncharacterized LOC107903732 Neighboring gene uncharacterized LOC107948727 Neighboring gene uncharacterized LOC107902309 Neighboring gene probable pectinesterase/pectinesterase inhibitor 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053424.1 Chromosome A01 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pectinesterase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053424.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    82405756..82407945 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016829877.2 → XP_016685366.1  pectinesterase

    UniProtKB/TrEMBL
    A0A1U8J4Y2
    Conserved Domains (2) summary
    cd15798
    Location:28 → 173
    PMEI-like_3; Uncharacterized subfamily of plant invertase/pectin methylesterase inhibitor domains
    pfam01095
    Location:215 → 508
    Pectinesterase
Nucleotide Protein
Heading Accession and Version

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