U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107896962 probable beta-1,4-xylosyltransferase IRX10 [ Gossypium hirsutum (cotton) ]

Gene ID: 107896962, updated on 12-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107896962
Gene description
probable beta-1,4-xylosyltransferase IRX10
Locus tag
ERO13_A03G153100v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107896962 in Genome Data Viewer
Location:
chromosome: A03
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A03 NC_053426.1 (104903045..104905429, complement)

Chromosome A03 - NC_053426.1Genomic Context describing neighboring genes Neighboring gene sterol 14-demethylase Neighboring gene uncharacterized LOC121220856 Neighboring gene uncharacterized LOC121220858 Neighboring gene small nucleolar RNA R71 Neighboring gene indole-3-acetic acid-amido synthetase GH3.17

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053426.1 Chromosome A03 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glucuronoxylan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type secondary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable beta-1,4-xylosyltransferase IRX10

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053426.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    104903045..104905429 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016822281.2 → XP_016677770.1  probable beta-1,4-xylosyltransferase IRX10

    UniProtKB/TrEMBL
    A0A1U8II46
    Conserved Domains (1) summary
    pfam03016
    Location:45 → 340
    Exostosin; Exostosin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases