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LOC107893954 putative pectinesterase/pectinesterase inhibitor 22 [ Gossypium hirsutum (cotton) ]

Gene ID: 107893954, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107893954
Gene description
putative pectinesterase/pectinesterase inhibitor 22
Locus tag
ERO13_A13G110400v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107893954 in Genome Data Viewer
Location:
chromosome: A13
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A13 NC_053436.1 (77825751..77827901, complement)

Chromosome A13 - NC_053436.1Genomic Context describing neighboring genes Neighboring gene bidirectional sugar transporter SWEET16 Neighboring gene zinc finger protein KNUCKLES Neighboring gene small nucleolar RNA snoR53Y Neighboring gene small nucleolar RNA snoR69Y

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053436.1 Chromosome A13 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pectinesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pectinesterase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall modification IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative pectinesterase/pectinesterase inhibitor 22

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053436.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    77825751..77827901 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016819115.2 → XP_016674604.1  putative pectinesterase/pectinesterase inhibitor 22

    UniProtKB/TrEMBL
    A0A1U8IFI0
    Conserved Domains (1) summary
    PLN02506
    Location:15 → 533
    PLN02506; putative pectinesterase/pectinesterase inhibitor
Nucleotide Protein
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