U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107893375 sucrose synthase-like [ Gossypium hirsutum (cotton) ]

Gene ID: 107893375, updated on 12-Aug-2024

Summary

Go to the top of the page Help
Gene symbol
LOC107893375
Gene description
sucrose synthase-like
Locus tag
ERO13_D13G196200v2
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107893375 in Genome Data Viewer
Location:
chromosome: D13
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) D13 NC_053449.1 (60048702..60052970)

Chromosome D13 - NC_053449.1Genomic Context describing neighboring genes Neighboring gene phosphoinositide phosphatase SAC3 Neighboring gene kinesin-like protein KIN-7B Neighboring gene auxin-responsive protein SAUR76 Neighboring gene 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_053449.1 Chromosome D13 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A novel isoform of sucrose synthase is targeted to the cell wall during secondary cell wall synthesis in cotton fiber. Brill E, et al. Plant Physiol, 2011 Sep. PMID 21757635, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sucrose synthase-like
Names
sucrose synthase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001326810.1 → NP_001313739.1  sucrose synthase-like

    Status: PROVISIONAL

    Source sequence(s)
    JN376127
    UniProtKB/TrEMBL
    A0A1U8I6I4, G1JRK7
    Conserved Domains (3) summary
    PLN00142
    Location:1 → 806
    PLN00142; sucrose synthase
    pfam00534
    Location:556 → 738
    Glycos_transf_1; Glycosyl transferases group 1
    pfam00862
    Location:16 → 553
    Sucrose_synth; Sucrose synthase

RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053449.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    60048702..60052970
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases