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LOC107888020 laccase-11 [ Gossypium hirsutum (cotton) ]

Gene ID: 107888020, updated on 12-Aug-2024

Summary

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Gene symbol
LOC107888020
Gene description
laccase-11
Locus tag
ERO13_A03G066200v2
Gene type
protein coding
RefSeq status
MODEL
Organism
Gossypium hirsutum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Genomic context

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See LOC107888020 in Genome Data Viewer
Location:
chromosome: A03
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current Gossypium_hirsutum_v2.1 (GCF_007990345.1) A03 NC_053426.1 (17830533..17832846)

Chromosome A03 - NC_053426.1Genomic Context describing neighboring genes Neighboring gene NAP1-related protein 1 Neighboring gene NAP1-related protein 1 Neighboring gene dol-P-Man:Man(6)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase Neighboring gene protein PHYTOCHROME KINASE SUBSTRATE 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_053426.1 Chromosome A03 Reference Gossypium_hirsutum_v2.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_007990345.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Gossypium_hirsutum_v2.1 Primary Assembly

Genomic

  1. NC_053426.1 Reference Gossypium_hirsutum_v2.1 Primary Assembly

    Range
    17830533..17832846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041096653.1 → XP_040952587.1  laccase-11 isoform X1

    UniProtKB/TrEMBL
    A0A1U8KAA6
    Conserved Domains (1) summary
    TIGR03389
    Location:29 → 578
    laccase; plant

  2. XM_041096660.1 → XP_040952594.1  laccase-11 isoform X3

    UniProtKB/TrEMBL
    A0A1U8KAA6
    Conserved Domains (1) summary
    TIGR03389
    Location:29 → 562
    laccase; plant

  3. XM_016812204.2 → XP_016667693.1  laccase-11 isoform X2

    UniProtKB/TrEMBL
    A0A1U8HUR3, A0A1U8KAA6
    Conserved Domains (1) summary
    TIGR03389
    Location:29 → 563
    laccase; plant
Nucleotide Protein
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