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LOC107878001 isoamylase 1, chloroplastic [ Capsicum annuum ]

Gene ID: 107878001, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107878001
Gene description
isoamylase 1, chloroplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC107878001 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 7 NC_061117.1 (45015141..45018220)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 7 NC_029983.1 (132522065..132539371)

Chromosome 7 - NC_061117.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124885508 Neighboring gene uncharacterized LOC107878002 Neighboring gene isoamylase 1, chloroplastic-like Neighboring gene uncharacterized LOC107877912

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
isoamylase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061117.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    45015141..45018220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047393508.1 → XP_047249464.1  isoamylase 1, chloroplastic

Nucleotide Protein
Heading Accession and Version

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