U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC107877893 sucrose synthase [ Capsicum annuum ]

Gene ID: 107877893, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC107877893
Gene description
sucrose synthase
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC107877893 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 7 NC_061117.1 (51516672..51520677, complement)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 7 NC_029983.1 (74791455..74795255)

Chromosome 7 - NC_061117.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107876505 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC107876504 Neighboring gene glycerophosphocholine acyltransferase 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sucrose synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sucrose synthase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061117.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    51516672..51520677 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016724684.2 → XP_016580170.1  sucrose synthase

    UniProtKB/TrEMBL
    A0A1U8HA04
    Conserved Domains (1) summary
    PLN00142
    Location:7 → 803
    PLN00142; sucrose synthase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases