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LOC107877568 cellulose synthase A catalytic subunit 7 [UDP-forming] [ Capsicum annuum ]

Gene ID: 107877568, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107877568
Gene description
cellulose synthase A catalytic subunit 7 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107877568 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
12
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 7 NC_061117.1 (2911513..2917522, complement)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 7 NC_029983.1 (7254889..7260904)

Chromosome 7 - NC_061117.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107876314 Neighboring gene AUGMIN subunit 8 Neighboring gene pentatricopeptide repeat-containing protein At4g30700 Neighboring gene translation initiation factor IF3-4, chloroplastic Neighboring gene heat shock 70 kDa protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 7 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061117.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    2911513..2917522 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016724239.2 → XP_016579725.1  cellulose synthase A catalytic subunit 7 [UDP-forming]

    UniProtKB/TrEMBL
    A0A1U8H8R9
    Conserved Domains (1) summary
    PLN02189
    Location:1 → 1041
    PLN02189; cellulose synthase
Nucleotide Protein
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