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LOC107874014 callose synthase 3 [ Capsicum annuum ]

Gene ID: 107874014, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107874014
Gene description
callose synthase 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107874014 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
43
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 1 NC_061111.1 (44798008..44822011)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 1 NC_029977.1 (50338131..50362711)

Chromosome 1 - NC_061111.1Genomic Context describing neighboring genes Neighboring gene extensin-2 Neighboring gene uncharacterized LOC107873998 Neighboring gene callose synthase 9 Neighboring gene uncharacterized LOC107842420

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061111.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    44798008..44822011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016720919.2 → XP_016576405.1  callose synthase 3

    UniProtKB/TrEMBL
    A0A2G3AHK4
    Conserved Domains (3) summary
    pfam02364
    Location:1048 → 1803
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:46 → 171
    Vta1; Vta1 like
    pfam14288
    Location:317 → 430
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_016720921.2 → XP_016576407.1  callose synthase 3

    UniProtKB/TrEMBL
    A0A2G3AHK4
    Conserved Domains (3) summary
    pfam02364
    Location:1048 → 1803
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam04652
    Location:46 → 171
    Vta1; Vta1 like
    pfam14288
    Location:317 → 430
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases