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LOC107871253 cellulose synthase-like protein D1 [ Capsicum annuum ]

Gene ID: 107871253, updated on 30-Nov-2023

Summary

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Gene symbol
LOC107871253
Gene description
cellulose synthase-like protein D1
Gene type
protein coding
RefSeq status
MODEL
Organism
Capsicum annuum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Genomic context

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See LOC107871253 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
101 current UCD10Xv1.1 (GCF_002878395.1) 5 NC_061115.1 (213375067..213379662)
100 previous assembly Pepper Zunla 1 Ref_v1.0 (GCF_000710875.1) 5 NC_029981.1 (205874505..205879079)

Chromosome 5 - NC_061115.1Genomic Context describing neighboring genes Neighboring gene pleiotropic drug resistance protein 1 Neighboring gene methionine--tRNA ligase, cytoplasmic Neighboring gene uncharacterized LOC107872664 Neighboring gene protein SULFUR DEFICIENCY-INDUCED 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mannan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase-like protein D1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Capsicum annuum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCD10Xv1.1 Primary Assembly

Genomic

  1. NC_061115.1 Reference UCD10Xv1.1 Primary Assembly

    Range
    213375067..213379662
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016718137.2 → XP_016573623.1  cellulose synthase-like protein D1 isoform X2

    UniProtKB/TrEMBL
    A0A1U8GXT7

  2. XM_016718136.2 → XP_016573622.1  cellulose synthase-like protein D1 isoform X1

    UniProtKB/TrEMBL
    A0A1U8GQT0
    Conserved Domains (1) summary
    PLN02248
    Location:11 → 1038
    PLN02248; cellulose synthase-like protein
Nucleotide Protein
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